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">PubChem Substance</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/chemicals-bioassays/">All Chemicals &amp; Bioassays Resources...</a></li></ul></li><li><a href="#dna-rna">DNA &amp; RNA</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu dna-rna"><li><a href="http://blast.ncbi.nlm.nih.gov/" title=" Tool for finding local regions of sequence similarity ">BLAST (Basic Local Alignment Search Tool)</a></li><li><a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download" title=" BLAST programs for a local computer ">BLAST (Stand-alone)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK25501/" title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system ">E-Utilities</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genbank/" title=" DNA and RNA sequences submitted to NCBI ">GenBank</a></li><li><a href="http://www.ncbi.nlm.nih.gov/WebSub/?tool=genbank" title=" Web tool for simple submissions of nucleotide sequences ">GenBank: BankIt</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/Sequin" title=" Software tool for complex submissions of nucleotide sequences ">GenBank: Sequin</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genbank/tbl2asn2.html" title=" Command-line program for submitting sequence data ">GenBank: tbl2asn</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/gbench/" title=" Stand-alone application for analyzing sequence data ">Genome Workbench</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genomes/FLU/" title=" Data from the NIAID Influenza Genome Sequencing Project ">Influenza Virus</a></li><li><a href="http://www.ncbi.nlm.nih.gov/nuccore" title=" Nucleotide sequence data in GenBank and RefSeq ">Nucleotide Database</a></li><li><a href="http://www.ncbi.nlm.nih.gov/popset" title=" Sets of nucleotide sequences representing a population ">PopSet</a></li><li><a href="http://www.ncbi.nlm.nih.gov/tools/primer-blast" title=" Designs PCR primers and analyzes them for target specificity using BLAST. ">Primer-BLAST</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/static/prosplign/prosplign.html" title=" Tool for aligning proteins to genomic DNA ">ProSplign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/RefSeq/" title=" Curated nucleotide and protein sequences produced by NCBI ">Reference Sequence (RefSeq)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/refseq/rsg/" title=" RefSeqGene reference standards for genomic sequences of well-characterized genes ">RefSeqGene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?" title=" Database of sequences reads from next generation sequencing technologies ">Sequence Read Archive (SRA)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/splign" title=" Tool for aligning transcripts to genomic DNA ">Splign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Traces/trace.cgi" title=" DNA chromatograms, base calls, and quality estimates for single-pass reads. ">Trace Archive</a></li><li><a href="http://www.ncbi.nlm.nih.gov/unigene" title=" Gene-centered clusters of transcripts and ESTs ">UniGene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/unists" title=" Database of Sequence Tagged Sites ">UniSTS</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/dna-rna/">All DNA &amp; RNA Resources...</a></li></ul></li><li><a href="#data-software">Data &amp; Software</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu data-software"><li><a href="http://blast.ncbi.nlm.nih.gov/" title=" Tool for finding local regions of sequence similarity ">BLAST (Basic Local Alignment Search Tool)</a></li><li><a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download" title=" BLAST programs for a local computer ">BLAST (Stand-alone)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml" title=" Program for viewing 3D structures and alignments ">Cn3D</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi" title=" Locates conserved domains within a protein sequence ">Conserved Domain Search Service (CD Search)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK25501/" title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system ">E-Utilities</a></li><li><a href="http://www.ncbi.nlm.nih.gov/WebSub/?tool=genbank" title=" Web tool for simple submissions of nucleotide sequences ">GenBank: BankIt</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/Sequin" title=" Software tool for complex submissions of nucleotide sequences ">GenBank: Sequin</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genbank/tbl2asn2.html" title=" Command-line program for submitting sequence data ">GenBank: tbl2asn</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/protmap.cgi" title=" Maps proteins from a COG/VOG back to its genome ">Genome ProtMap</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/gbench/" title=" Stand-alone application for analyzing sequence data ">Genome Workbench</a></li><li><a href="http://www.ncbi.nlm.nih.gov/tools/primer-blast" title=" Designs PCR primers and analyzes them for target specificity using BLAST. ">Primer-BLAST</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/static/prosplign/prosplign.html" title=" Tool for aligning proteins to genomic DNA ">ProSplign</a></li><li><a href="http://pubchem.ncbi.nlm.nih.gov/search/search.cgi" title=" Searches PubChem Compound by chemical structure ">PubChem Structure Search</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/SNP" title=" The SNP database tools page provides links to the general submission guidelines and to the submission handle request. ">SNP Submission Tool</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/splign" title=" Tool for aligning transcripts to genomic DNA ">Splign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.html" title=" Tool that generates 3D structural alignments ">Vector Alignment Search Tool (VAST)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/data-software/">All Data &amp; Software Resources...</a></li></ul></li><li><a href="#domains-structures">Domains &amp; Structures</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu domains-structures"><li><a href="http://www.ncbi.nlm.nih.gov/biosystems/" title=" Database that groups biomedical literature, small molecules, and sequence data in terms of biological relationships. ">BioSystems</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml" title=" Program for viewing 3D structures and alignments ">Cn3D</a></li><li><a href="http://www.ncbi.nlm.nih.gov/cdd" title=" Database of conserved protein domains represented by multiple sequence alignments ">Conserved Domain Database (CDD)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi" title=" Locates conserved domains within a protein sequence ">Conserved Domain Search Service (CD Search)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure" title=" Database of 3D macromolecular structures derived from PDB ">Structure (Molecular Modeling Database)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.html" title=" Tool that generates 3D structural alignments ">Vector Alignment Search Tool (VAST)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/domains-structures/">All Domains &amp; Structures Resources...</a></li></ul></li><li><a href="#genes-expression">Genes &amp; Expression</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu genes-expression"><li><a href="http://www.ncbi.nlm.nih.gov/biosystems/" title=" Database that groups biomedical literature, small molecules, and sequence data in terms of biological relationships. ">BioSystems</a></li><li><a href="http://www.ncbi.nlm.nih.gov/gap" title=" Genotype/Phenotype association studies ">Database of Genotypes and Phenotypes (dbGaP)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK25501/" title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system ">E-Utilities</a></li><li><a href="http://www.ncbi.nlm.nih.gov/gene" title=" Database of gene loci and associated transcripts and proteins ">Gene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/geo/" title=" Gene Expression Omnibus (GEO) Database ">Gene Expression Omnibus (GEO) Database </a></li><li><a href="http://www.ncbi.nlm.nih.gov/gds" title=" Curated collections of gene expression data sets ">Gene Expression Omnibus (GEO) Datasets</a></li><li><a href="http://www.ncbi.nlm.nih.gov/geoprofiles/" title=" Database of gene expression Profiles for individual sequences ">Gene Expression Omnibus (GEO) Profiles</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/gbench/" title=" Stand-alone application for analyzing sequence data ">Genome Workbench</a></li><li><a href="http://www.ncbi.nlm.nih.gov/homologene" title=" Sets of homologous eukaryotic genes ">HomoloGene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/mapview/" title=" Tool for searching, viewing and downloading genomic maps and related data ">Map Viewer</a></li><li><a href="http://www.ncbi.nlm.nih.gov/omim" title=" Database of human genes and genetic disorders ">Online Mendelian Inheritance in Man (OMIM)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/refseq/rsg/" title=" RefSeqGene reference standards for genomic sequences of well-characterized genes ">RefSeqGene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/unigene" title=" Gene-centered clusters of transcripts and ESTs ">UniGene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/genes-expression/">All Genes &amp; Expression Resources...</a></li></ul></li><li><a href="#genetics-medicine">Genetics &amp; Medicine</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu genetics-medicine"><li><a href="http://www.ncbi.nlm.nih.gov/books" title=" Online biomedical books ">Bookshelf</a></li><li><a href="http://www.ncbi.nlm.nih.gov/gap" title=" Genotype/Phenotype association studies ">Database of Genotypes and Phenotypes (dbGaP)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genomes/FLU/" title=" Data from the NIAID Influenza Genome Sequencing Project ">Influenza Virus</a></li><li><a href="http://www.ncbi.nlm.nih.gov/mapview/" title=" Tool for searching, viewing and downloading genomic maps and related data ">Map Viewer</a></li><li><a href="http://www.ncbi.nlm.nih.gov/omim" title=" Database of human genes and genetic disorders ">Online Mendelian Inheritance in Man (OMIM)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/pubmed" title=" Biomedical literature abstracts ">PubMed</a></li><li><a href="http://www.ncbi.nlm.nih.gov/pmc/" title=" Free, full-text articles ">PubMed Central (PMC)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/pubmed/clinical" title=" Directory of PubMed queries about clinical topics ">PubMed Clinical Queries</a></li><li><a href="http://www.ncbi.nlm.nih.gov/refseq/rsg/" title=" RefSeqGene reference standards for genomic sequences of well-characterized genes ">RefSeqGene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/genetics-medicine/">All Genetics &amp; Medicine Resources...</a></li></ul></li><li><a href="#genomes-maps">Genomes &amp; Maps</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu genomes-maps"><li><a href="http://www.ncbi.nlm.nih.gov/dbvar" title=" A database of genomic structural variation ">Database of Genomic Structural Variation (dbVar)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genbank/tbl2asn2.html" title=" Command-line program for submitting sequence data ">GenBank: tbl2asn</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sites/genome" title=" Curated genomic DNA sequences ">Genome</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genomeprj" title=" Central status pages for genome sequencing projects ">Genome Project</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/protmap.cgi" title=" Maps proteins from a COG/VOG back to its genome ">Genome ProtMap</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/gbench/" title=" Stand-alone application for analyzing sequence data ">Genome Workbench</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genomes/FLU/" title=" Data from the NIAID Influenza Genome Sequencing Project ">Influenza Virus</a></li><li><a href="http://www.ncbi.nlm.nih.gov/mapview/" title=" Tool for searching, viewing and downloading genomic maps and related data ">Map Viewer</a></li><li><a href="http://www.ncbi.nlm.nih.gov/nuccore" title=" Nucleotide sequence data in GenBank and RefSeq ">Nucleotide Database</a></li><li><a href="http://www.ncbi.nlm.nih.gov/popset" title=" Sets of nucleotide sequences representing a population ">PopSet</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/static/prosplign/prosplign.html" title=" Tool for aligning proteins to genomic DNA ">ProSplign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?" title=" Database of sequences reads from next generation sequencing technologies ">Sequence Read Archive (SRA)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/splign" title=" Tool for aligning transcripts to genomic DNA ">Splign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Traces/trace.cgi" title=" DNA chromatograms, base calls, and quality estimates for single-pass reads. ">Trace Archive</a></li><li><a href="http://www.ncbi.nlm.nih.gov/unists" title=" Database of Sequence Tagged Sites ">UniSTS</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/genomes-maps/">All Genomes &amp; Maps Resources...</a></li></ul></li><li><a href="#homology">Homology</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu homology"><li><a href="http://blast.ncbi.nlm.nih.gov/" title=" Tool for finding local regions of sequence similarity ">BLAST (Basic Local Alignment Search Tool)</a></li><li><a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download" title=" BLAST programs for a local computer ">BLAST (Stand-alone)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/blink.cgi?mode=query" title=" Pre-computed reports showing proteins with similar sequences ">BLAST Link (BLink)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/cdd" title=" Database of conserved protein domains represented by multiple sequence alignments ">Conserved Domain Database (CDD)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi" title=" Locates conserved domains within a protein sequence ">Conserved Domain Search Service (CD Search)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/protmap.cgi" title=" Maps proteins from a COG/VOG back to its genome ">Genome ProtMap</a></li><li><a href="http://www.ncbi.nlm.nih.gov/homologene" title=" Sets of homologous eukaryotic genes ">HomoloGene</a></li><li><a href="http://www.ncbi.nlm.nih.gov/proteinclusters" title=" Clusters of related proteins from prokaryotes and organelles ">Protein Clusters</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/homology/">All Homology Resources...</a></li></ul></li><li><a href="#literature">Literature</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu literature"><li><a href="http://www.ncbi.nlm.nih.gov/books" title=" Online biomedical books ">Bookshelf</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK25501/" title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system ">E-Utilities</a></li><li><a href="http://www.ncbi.nlm.nih.gov/nlmcatalog/journals" title=" Information on journals cited by NCBI records ">Journals in NCBI Databases</a></li><li><a href="http://www.ncbi.nlm.nih.gov/mesh" title=" Controlled vocabulary for MEDLINE ">MeSH Database</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK21101/" title=" Introductory articles about NCBI resources ">NCBI Handbook</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK3831/" title=" Online, searchable help documentation ">NCBI Help Manual</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK1969/" title=" NCBI's monthly newsletter ">NCBI News</a></li><li><a href="http://www.ncbi.nlm.nih.gov/pubmed" title=" Biomedical literature abstracts ">PubMed</a></li><li><a href="http://www.ncbi.nlm.nih.gov/pmc/" title=" Free, full-text articles ">PubMed Central (PMC)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/pubmed/clinical" title=" Directory of PubMed queries about clinical topics ">PubMed Clinical Queries</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/literature/">All Literature Resources...</a></li></ul></li><li><a href="#proteins">Proteins</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu proteins"><li><a href="http://www.ncbi.nlm.nih.gov/biosystems/" title=" Database that groups biomedical literature, small molecules, and sequence data in terms of biological relationships. ">BioSystems</a></li><li><a href="http://blast.ncbi.nlm.nih.gov/" title=" Tool for finding local regions of sequence similarity ">BLAST (Basic Local Alignment Search Tool)</a></li><li><a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download" title=" BLAST programs for a local computer ">BLAST (Stand-alone)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/blink.cgi?mode=query" title=" Pre-computed reports showing proteins with similar sequences ">BLAST Link (BLink)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/cdd" title=" Database of conserved protein domains represented by multiple sequence alignments ">Conserved Domain Database (CDD)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi" title=" Locates conserved domains within a protein sequence ">Conserved Domain Search Service (CD Search)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK25501/" title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system ">E-Utilities</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/static/prosplign/prosplign.html" title=" Tool for aligning proteins to genomic DNA ">ProSplign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/proteinclusters" title=" Clusters of related proteins from prokaryotes and organelles ">Protein Clusters</a></li><li><a href="http://www.ncbi.nlm.nih.gov/protein" title=" Protein sequence data ">Protein Database</a></li><li><a href="http://www.ncbi.nlm.nih.gov/RefSeq/" title=" Curated nucleotide and protein sequences produced by NCBI ">Reference Sequence (RefSeq)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/proteins/">All Proteins Resources...</a></li></ul></li><li><a href="#sequence-analysis">Sequence Analysis</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu sequence-analysis"><li><a href="http://blast.ncbi.nlm.nih.gov/" title=" Tool for finding local regions of sequence similarity ">BLAST (Basic Local Alignment Search Tool)</a></li><li><a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download" title=" BLAST programs for a local computer ">BLAST (Stand-alone)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/blink.cgi?mode=query" title=" Pre-computed reports showing proteins with similar sequences ">BLAST Link (BLink)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi" title=" Locates conserved domains within a protein sequence ">Conserved Domain Search Service (CD Search)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/protmap.cgi" title=" Maps proteins from a COG/VOG back to its genome ">Genome ProtMap</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/gbench/" title=" Stand-alone application for analyzing sequence data ">Genome Workbench</a></li><li><a href="http://www.ncbi.nlm.nih.gov/genomes/FLU/" title=" Data from the NIAID Influenza Genome Sequencing Project ">Influenza Virus</a></li><li><a href="http://www.ncbi.nlm.nih.gov/tools/primer-blast" title=" Designs PCR primers and analyzes them for target specificity using BLAST. ">Primer-BLAST</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/static/prosplign/prosplign.html" title=" Tool for aligning proteins to genomic DNA ">ProSplign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/sutils/splign" title=" Tool for aligning transcripts to genomic DNA ">Splign</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/sequence-analysis/">All Sequence Analysis Resources...</a></li></ul></li><li><a href="#taxonomy">Taxonomy</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu taxonomy"><li><a href="http://www.ncbi.nlm.nih.gov/taxonomy" title=" The NCBI taxonomy tree in Entrez ">Taxonomy</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Root" title=" Displays and links Entrez data to each taxonomic node ">Taxonomy Browser</a></li><li><a href="http://www.ncbi.nlm.nih.gov/Taxonomy/CommonTree/wwwcmt.cgi" title=" Creates custom taxonomic trees ">Taxonomy Common Tree</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/taxonomy/">All Taxonomy Resources...</a></li></ul></li><li><a href="#training-tutorials">Training &amp; Tutorials</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu training-tutorials"><li><a href="http://www.ncbi.nlm.nih.gov/education/" title=" Central page providing links to tutorials and training materials ">NCBI Education Page</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK21101/" title=" Introductory articles about NCBI resources ">NCBI Handbook</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK3831/" title=" Online, searchable help documentation ">NCBI Help Manual</a></li><li><a href="http://www.ncbi.nlm.nih.gov/books/NBK1969/" title=" NCBI's monthly newsletter ">NCBI News</a></li><li><a href="http://www.ncbi.nlm.nih.gov/About/primer/" title=" An introduction to bioinformatics at NCBI ">Science Primer</a></li><li><a href="http://www.ncbi.nlm.nih.gov/guide/training-tutorials/">All Training &amp; Tutorials Resources...</a></li></ul></li><li><a href="#variation">Variation</a><ul aria-hidden="true" style="position: static; display: none;" class="actual-resources-submenu variation"><li><a href="http://www.ncbi.nlm.nih.gov/dbvar" title=" A database of genomic structural variation ">Database of Genomic Structural Variation (dbVar)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/gap" title=" Genotype/Phenotype association studies ">Database of Genotypes and Phenotypes (dbGaP)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/snp" title=" Database of nucleotide sequence polymorphisms ">Database of Single Nucleotide Polymorphisms (dbSNP)</a></li><li><a href="http://www.ncbi.nlm.nih.gov/projects/SNP" title=" The SNP database tools page provides links to the general submission guidelines and to the submission handle request. 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  <h1>methanol dehydrogenase protein, large subunit [Methylococcus capsulatus str. Bath]</h1>
  <p class="itemid">NCBI Reference Sequence: YP_113281.1</p>
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  <div id="viewercontent1" class="seq gbff" val="53804883" sequencesize="4559223" virtualsequence=""><div><pre>&gt;gi|53804883|ref|YP_113281.1| methanol dehydrogenase protein, large subunit [Methylococcus capsulatus str. Bath]
<span class="ff_line" id="gi_53804883_1">MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKV</span>
<span class="ff_line" id="gi_53804883_71">AWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLA</span>
<span class="ff_line" id="gi_53804883_141">YVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRG</span>
<span class="ff_line" id="gi_53804883_211">YVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKL</span>
<span class="ff_line" id="gi_53804883_281">DMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLT</span>
<span class="ff_line" id="gi_53804883_351">PLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYH</span>
<span class="ff_line" id="gi_53804883_421">NQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMNAVTGKMEWEV</span>
<span class="ff_line" id="gi_53804883_491">PEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGG</span>
<span class="ff_line" id="gi_53804883_561">WPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL</span>
<script type="text/javascript">if (typeof(oData) == "undefined") oData = []; oData.push({gi:53804883,acc:"YP_113281"})</script>

</pre></div></div>
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      <h3>Change region shown</h3>
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    <div class="portlet brieflink">
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      <h3>Analyze this sequence</h3>
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    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-3" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_ToolsList.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="Sequence_ToolsList" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_ToolsList.Shutter"></a>
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    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins&amp;PROGRAM=blastp&amp;BLAST_PROGRAMS=blastp&amp;QUERY=YP_113281.1&amp;LINK_LOC=protein&amp;PAGE_TYPE=BlastSearch" ref="log$=seqview_list_blast&amp;discoId=seqtools">Run BLAST</a>
      <div id="ui-brieflinkpop-15" class="brieflinkpop offscreen_noflow">Find regions of similarity between this sequence and other sequences using BLAST.</div>
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    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?INPUT_TYPE=live&amp;SEQUENCE=YP_113281.1" ref="log$=seqview_list_cdsearch&amp;discoId=seqtools">Identify Conserved Domains</a>
      <div id="ui-brieflinkpop-16" class="brieflinkpop offscreen_noflow">View conserved domains detected in this protein sequence using CD-search.</div>
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    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/nuccore/YP_113281.1?&amp;feature=any" ref="log$=seqview_list_highlight&amp;highlightsource=any&amp;discoId=seqtools">Highlight Sequence Features</a>
      <div id="ui-brieflinkpop-17" class="brieflinkpop offscreen_noflow">Opens
 the Highlight Feature Bar and highlights feature annotations from the 
FEATURES table of the record. The Highlight Feature Bar can be used to 
navigate to and highlight other features and provides links to display 
the highlighted region separately. Links in the FEATURES table will also
 highlight the corresponding region of the sequence. 
                        <a href="http://www.ncbi.nlm.nih.gov/books/NBK44863/#sequencesquickstart.How_can_I_locate_and">More...</a></div>
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      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="javascript:Portal.$send('SeqSearchClicked')" ref="log$=seqview_list_find&amp;discoId=seqtools">Find in this Sequence</a>
      <div id="ui-brieflinkpop-18" class="brieflinkpop offscreen_noflow">Finds
 sub-sequences or patterns in the sequence and highlights the matching 
regions. 
                        The tool works with standard single letter 
nucleotide or protein codes including ambiguities and can match Prosite 
patterns in protein sequences. 
                        <a href="http://www.ncbi.nlm.nih.gov/books/NBK44863/#sequencesquickstart.How_can_I_search_for">More...</a></div>
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      <h3>Articles about the mxaF gene</h3>
    </div>
    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-4" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryPubMedRA.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="Sequence_DiscoveryPubMedRA" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryPubMedRA.Shutter"></a>
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  <ul>
    <li class="brieflinkpopper two_line">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/pubmed/15383840" ref="ordinalpos=1&amp;linkpos=1&amp;log$=seqview_pubmed">Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).</a>
      <span class="source">[PLoS Biol. 2004]</span>
      <div id="ui-brieflinkpop-19" class="brieflinkpop offscreen_noflow">Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).<div class="brieflinkpopdesc"><em class="author">Ward N, Larsen Ø, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D, Kang KH, et al. </em><em class="cit">PLoS Biol. 2004 Oct; 2(10):e303. Epub 2004 Sep 21.</em></div></div>
    </li>
  </ul>
  <a class="seemore" href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;cmd=link&amp;linkname=protein_pubmed_weighted&amp;uid=53804883" ref="ordinalpos=1&amp;log$=seqview_pubmed">See all...</a>
</div></div>
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      <h3>Identical proteins for YP_113281.1</h3>
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    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-5" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryIdenticalProteins.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="Sequence_DiscoveryIdenticalProteins" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryIdenticalProteins.Shutter"></a>
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  <div class="" aria-live="assertive"><div style="margin: 0px;" aria-hidden="false" id="ui-portlet_content-5" class="portlet_content Sequence_DiscoveryIdenticalProteins ui-ncbitoggler ui-ncbitoggler-slave-open">
  <ul>
    <li class="brieflinkpopper two_line">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein/300657480" ref="ordinalpos=1&amp;linkpos=1&amp;log$=identicalproteins">unnamed protein product [Methylococcus capsulatus str. Bath]</a>
      <span class="source">[CBV07092]</span>
      <div id="ui-brieflinkpop-20" class="brieflinkpop offscreen_noflow">unnamed protein product [Methylococcus capsulatus str. Bath]<br><em class="cit">gi|300657480|emb|CBV07092.1|</em></div>
    </li>
    <li class="brieflinkpopper two_line">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein/300582899" ref="ordinalpos=1&amp;linkpos=2&amp;log$=identicalproteins">unnamed protein product [Methylococcus capsulatus str. Bath]</a>
      <span class="source">[CBV28159]</span>
      <div id="ui-brieflinkpop-21" class="brieflinkpop offscreen_noflow">unnamed protein product [Methylococcus capsulatus str. Bath]<br><em class="cit">gi|300582899|emb|CBV28159.1|</em></div>
    </li>
    <li class="brieflinkpopper two_line">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein/259693888" ref="ordinalpos=1&amp;linkpos=3&amp;log$=identicalproteins">unnamed protein product [Methylococcus capsulatus str. Bath]</a>
      <span class="source">[CBG14713]</span>
      <div id="ui-brieflinkpop-22" class="brieflinkpop offscreen_noflow">unnamed protein product [Methylococcus capsulatus str. Bath]<br><em class="cit">gi|259693888|emb|CBG14713.1|</em></div>
    </li>
  </ul>
  <a class="seemore" href="http://www.ncbi.nlm.nih.gov/protein?db=protein&amp;cmd=link&amp;linkname=protein_protein_identical&amp;uid=53804883" ref="ordinalpos=1&amp;log$=identicalproteins">See all...</a>
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      <h3>Protein clusters for YP_113281.1</h3>
    </div>
    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-6" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryProteinClusters.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="Sequence_DiscoveryProteinClusters" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryProteinClusters.Shutter"></a>
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  <ul>
    <li>
      <a href="http://www.ncbi.nlm.nih.gov/proteinclusters/931615" ref="log$=seqview_proteinclusters_title">PQQ-dependent dehydrogenase, methanol/ethanol family</a>
      <div class="long_info">
        <div>Total proteins: 18</div>
        <div>Total genera: 11</div>
        <div>Conserved in: Proteobacteria</div>
      </div>
    </li>
  </ul>
</div></div>
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      <h3>Pathways for the mxaF gene</h3>
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    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-7" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryBioSystems.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="Sequence_DiscoveryBioSystems" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryBioSystems.Shutter"></a>
  </div>
  <div class="" aria-live="assertive"><div style="margin: 0px;" aria-hidden="false" id="ui-portlet_content-7" class="portlet_content Sequence_DiscoveryBioSystems ui-ncbitoggler ui-ncbitoggler-slave-open">
  <ul>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/biosystems/20068?Sel=geneid:3102522#show=genes" ref="linkpos=1&amp;log$=seqview_biosystems">Methane metabolism</a>
      <div id="ui-brieflinkpop-23" class="brieflinkpop offscreen_noflow">Methane metabolism<em class="desc">Methane
 is metabolized principally by methanotrophs and the methanogens in the 
global carbon cycle. Methanotrophs consume methane as the only source of
 carbon, while methanogens produce methane as a m ...
                            </em><em class="note">[bsid20068]</em></div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/biosystems/20004?Sel=geneid:3102522#show=genes" ref="linkpos=2&amp;log$=seqview_biosystems">Glycolysis / Gluconeogenesis</a>
      <div id="ui-brieflinkpop-24" class="brieflinkpop offscreen_noflow">Glycolysis / Gluconeogenesis<em class="desc">Glycolysis
 is the process of converting glucose into pyruvate and generating small
 amounts of ATP (energy) and NADH (reducing power). It is a central 
pathway that produces important precursor metaboli ...
                            </em><em class="note">[bsid20004]</em></div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/biosystems/175828?Sel=geneid:3102522#show=genes" ref="linkpos=3&amp;log$=seqview_biosystems">Chloroalkane and chloroalkene degradation</a>
      <div id="ui-brieflinkpop-25" class="brieflinkpop offscreen_noflow">Chloroalkane and chloroalkene degradation<em class="note">[bsid175828]</em></div>
    </li>
  </ul>
  <a class="seemore" href="http://www.ncbi.nlm.nih.gov/protein?db=protein&amp;cmd=link&amp;linkname=protein_biosystems&amp;uid=53804883" ref="log$=seqview_biosystems">See all...</a>
</div></div>
</div>

       
        
    
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      <h3>More about the  gene mxaF</h3>
    </div>
    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-8" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryGeneInfo.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="Sequence_DiscoveryGeneInfo" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.Sequence_DiscoveryGeneInfo.Shutter"></a>
  </div>
  <div class="" aria-live="assertive"><div style="margin: 0px;" aria-hidden="false" id="ui-portlet_content-8" class="portlet_content ui-ncbitoggler ui-ncbitoggler-slave-open">
  <ul>
    <li class="">
      <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=retrieve&amp;list_uids=3102522" ref="log$=seqview_gene">mxaF gene</a>
      <div class="long_info">Also Known As: MCA0779</div>
    </li>
  </ul>
</div></div>
</div>

    
    <div class="portlet brieflink">
  <div class="portlet_head">
    <div class="portlet_title">
      <h3>LinkOut to external resources</h3>
    </div>
    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-9" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.LinkOutPortlet.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="linkout_portlet" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_ViewerGenbankSidePanel.LinkOutPortlet.Shutter"></a>
  </div>
  <div class="" aria-live="assertive"><div style="margin: 0px;" aria-hidden="false" id="ui-portlet_content-9" class="portlet_content ui-ncbitoggler ui-ncbitoggler-slave-open">
  <ul>
    <li class="brieflinkpopper two_line">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://salilab.org/modbase/search?databaseID=53804883" ref="itool=LinkOutPortlet&amp;PrId=5447&amp;uid=53804883&amp;db=protein&amp;log$=linkoutlink">MODBASE, Database of Comparative Protein Structure Models (Sali Lab/UCSF)</a>
      <span class="source">[MODBASE, Database of Comparat...]</span>
      <div id="ui-brieflinkpop-26" class="brieflinkpop offscreen_noflow">MODBASE, Database of Comparative Protein Structure Models (Sali Lab/UCSF)</div>
    </li>
    <li class="brieflinkpopper two_line">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://phylomedb.org/?q=search_tree&amp;seqid=Phy001CAPU" ref="itool=LinkOutPortlet&amp;PrId=7652&amp;uid=53804883&amp;db=protein&amp;log$=linkoutlink">PhylomeDB</a>
      <span class="source">[PhylomeDB]</span>
      <div id="ui-brieflinkpop-27" class="brieflinkpop offscreen_noflow">PhylomeDB</div>
    </li>
  </ul>
</div></div>
</div>

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      <h3>Related information</h3>
    </div>
    <a style="position: absolute; padding: 0px;" aria-expanded="true" role="button" aria-disabled="false" toggles="ui-portlet_content-10" name="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_DiscoveryDbLinks.Shutter" sid="1" href="#" class="portlet_shutter ui-ncbitoggler-open" title="Show/hide content" remembercollapsed="true" pgsec_name="discovery_db_links" id="EntrezSystem2.PEntrez.Protein.Sequence_ResultsPanel.Sequence_SingleItemSupl.Sequence_DiscoveryDbLinks.Shutter"></a>
  </div>
  <div class="" aria-live="assertive"><div style="margin: 0px;" aria-hidden="false" id="ui-portlet_content-10" class="portlet_content DiscoveryDbLinks ui-ncbitoggler ui-ncbitoggler-slave-open">
  <ul>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/sutils/blink.cgi?pid=53804883" ref="log$=recordlinks">BLink</a>
      <div id="ui-brieflinkpop-28" class="brieflinkpop offscreen_noflow">BLAST
 Link. Pre-computed sequence similarity results (BLAST) including 
alignments for the current                  protein against the NCBI nr 
protein database. Organism specific,  RefSeq and other database subsets 
are                  available as well as access to a pre-computed 
multiple alignment.</div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein?Db=protein&amp;DbFrom=protein&amp;Cmd=Link&amp;LinkName=protein_protein&amp;IdsFromResult=53804883" ref="log$=recordlinks">Related Sequences</a>
      <div id="ui-brieflinkpop-29" class="brieflinkpop offscreen_noflow">Protein sequences related by sequence similarity (BLAST) score to the current records.</div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein?Db=protein&amp;DbFrom=protein&amp;Cmd=Link&amp;LinkName=protein_protein_identical&amp;IdsFromResult=53804883" ref="log$=recordlinks">Identical Proteins</a>
      <div id="ui-brieflinkpop-30" class="brieflinkpop offscreen_noflow">Proteins with identical sequences to the records in the current set.</div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein?Db=bioproject&amp;DbFrom=protein&amp;Cmd=Link&amp;LinkName=protein_bioproject&amp;IdsFromResult=53804883" ref="log$=recordlinks">BioProject</a>
      <div id="ui-brieflinkpop-31" class="brieflinkpop offscreen_noflow">Proteins related to BioProjects</div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein?Db=biosystems&amp;DbFrom=protein&amp;Cmd=Link&amp;LinkName=protein_biosystems&amp;IdsFromResult=53804883" ref="log$=recordlinks">BioSystems</a>
      <div id="ui-brieflinkpop-32" class="brieflinkpop offscreen_noflow">Pathways and other biosystems containing the current proteins.</div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?INPUT_TYPE=precalc&amp;SEQUENCE=53804883" ref="log$=recordlinks">CDD Search Results</a>
      <div id="ui-brieflinkpop-33" class="brieflinkpop offscreen_noflow">Graphical
 display of conserved domains identified in the protein using RPS-BLAST.
 The concise results (top-scoring hits) are shown by default, with an 
option to view the full results, if desired. Click on any domain 
footprint in the graphical display to see more details and to view the 
query protein sequence embedded in the domain model’s multiple sequence 
alignment.</div>
    </li>
    <li class="brieflinkpopper">
      <a aria-expanded="false" role="button" class="brieflinkpopperctrl" href="http://www.ncbi.nlm.nih.gov/protein?Db=cdd&amp;DbFrom=protein&amp;Cmd=Link&amp;LinkName=protein_cdd_concise_2&amp;IdsFromResult=53804883" ref="log$=recordlinks">Conserved Domains (Concise)</a>
      <div id="ui-brieflinkpop-34" class="brieflinkpop offscreen_noflow">Concise
 (top-scoring) list of conserved domains present in the current proteins
 as determined by a Conserved Domain Database search using RPS-BLAST. 
For each region on a protein query sequence, this set includes: (a) a 
specific hit, if one is available, (b) the conserved domain superfamily,
 and (c) the best-scoring hit that is classified as a multi-domain 
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for statistical significance, as well as the conserved domain 
superfamilies to which they belong.</div>
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conserved domains with similar organization.</div>
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 summary of three dimensional structures that contain one or more 
protein molecules similar in sequence to your query protein. Alignment 
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